rs29886722 SNP Detail

Summary

• ID
  rs29886722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33098682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTCATGC TCTGTACTGT
  ACATATTCTA TAGTCGATTA AGTTGTGCCT GGTAAAATTA CCATGAAGTC TCTAAAGCTA
  GGACTGTCAT GGTGTTACCT CTCATGGTGC AGAGTGTATT TAAGATATAG GACGCCCCCT
  TTTAACATAC ACAAATGGCA GGCACGTGCT TAGCCAGAAA CAGCCATTGG TTTGGAGAAA
  Y
  GATGTGTGGA TATTAAGACT AGATTCTGTT TAAGGTCCTG TCCCTGCTTT CTCTGCCTCT
  CACAACTGAG CCTGCAGATG ACCCTGAGAC TGTGTGACAT CTGCTCCCAA GCTGTCATCT
  CCACATGTCC CTCCTTCCTC TTCATCCTGT CCTGGTAGCT GGTACAGAAC CATCTTGCAG
  TCCCTACTCA TCTTTCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45521483	mCV24757702	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss46891807	NES10798464	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	T		C	T	C	C	T	C
ss134754051	ENSMUSSNP764379	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29886722					SNP	C	C	T	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891807	NES10798464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33098682 () rs orientation: forward

Symbol	Name	Function Class
4930419G24Rik	RIKEN cDNA 4930419G24 gene	within coordinates
Pex5l	peroxisomal biogenesis factor 5-like	Intron
Rr575046	regulatory region 575046	251 bp distal
Rr575047	regulatory region 575047	359 bp distal