rs29886787 SNP Detail

Summary

• ID
  rs29886787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77543852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTGAGT CCATGACTTA
  AAAACAAATG AACAAAACAA CCTGGCCAGG TCAAGAAACC CAACCCCTCT CCACCAACCA
  GGGCACCGCC CTCTTCCCCA GCGTTGCCCT CGAGCTGAAG ACCAAAGAGG GAGAGGAGGG
  CTCAGGCTGC TCCAGGCCAG CACGCAGGCT CAGCCTGTTT GCTCCAGTGA GATGGCAAGG
  R
  GTGATTCTAA AAATTACTGC CACTAGGGTT TGTCAGGCGG CTGCTGGTGA CTCCTCACTG
  GGTTTCCCTT CTCCCACCCT CCCTTTCTCT CCACAGATCA CCTCCCCAAA GGAGTCTGCT
  GTTAAACCTT CCCCATTACC AGCGGGCTCT CACTTCACAC CACCGGGAGA GAGAAGCTGG
  GACCGCAACT ACCAACTCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46350572	mCV25224191	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136659840	ENSMUSSNP4802500	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29886787					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77543852 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	162 bp upstream
Rr683389	regulatory region 683389	60 bp distal
Rr683390	regulatory region 683390	within coordinates
Rr683391	regulatory region 683391	247 bp proximal
Rr683392	regulatory region 683392	844 bp proximal
Tssr86194	transcription start site region 86194	90 bp downstream
Tssr86195	transcription start site region 86195	42 bp downstream
Tssr86196	transcription start site region 86196	23 bp downstream
Tssr86197	transcription start site region 86197	5 bp upstream
Tssr86198	transcription start site region 86198	49 bp upstream
Tssr86199	transcription start site region 86199	51 bp upstream
Tssr86200	transcription start site region 86200	66 bp upstream
Tssr86201	transcription start site region 86201	143 bp upstream