rs29886957 SNP Detail

Summary

• ID
  rs29886957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:107466816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA GAGCTAGTTC CAGGACAGCC
  R
  ACGCTACACA AAGAAACCCT ATCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46350763	mCV22576761	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss136948624	ENSMUSSNP77094	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss323191766	CHEV_9_107491948	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29886957					SNP	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107466816 () rs orientation: forward

Symbol	Name	Function Class
Gm68835	predicted gene, 68835	960 bp upstream
Ifrd2	interferon-related developmental regulator 2	Intron
Rr401663	regulatory region 401663	1979 bp downstream
Rr686552	regulatory region 686552	1965 bp distal
Rr686553	regulatory region 686553	971 bp distal
Rr686554	regulatory region 686554	470 bp distal
Rr686555	regulatory region 686555	667 bp proximal
Tssr87008	transcription start site region 87008	1961 bp downstream
Tssr87009	transcription start site region 87009	1937 bp downstream
Tssr87010	transcription start site region 87010	1871 bp downstream
Tssr87011	transcription start site region 87011	1816 bp downstream
Tssr87012	transcription start site region 87012	1728 bp downstream
Tssr87013	transcription start site region 87013	1307 bp upstream
Tssr87014	transcription start site region 87014	1329 bp upstream