rs29887295 SNP Detail

Summary

• ID
  rs29887295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33099145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATACGG GCGTGAAGCT
  GTCATCTTCT TTAGAAGTCC CCATTTTGAA AGCAAGGTTT TGTTCTCCAT ATGCTCAGCG
  CAGGGAGCCC ATCTGCTCTG TCTCTGGTTC TCAAATCGAG GTCCCAGGAC AGGGAACACT
  GGCTTTTCTG GGGACCTTTG TGGTTGACAG CTGGATCTGA CGTGATGGAT GAGCCTAGGG
  Y
  ACCAGAGACT TTAAATGTTT GGGTGATTTT TGAGCTCACT CAAGATCAAA AACCTCTGGA
  CTACGAAGTC ACATGTAGTG CATGCATTCT CTAGTCTTTG CTGTGTGATA CCAGCTGCCA
  GTCCAAGCTT CTTTGTTGGT AGTTTCTAAC TTCCATCTTG AAGCTTCAAG TTCAGCACAA
  CCCCAGCCCT GTAGTAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46891810	NES10798465	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29887295					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891810	NES10798465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33099145 () rs orientation: forward

Symbol	Name	Function Class
4930419G24Rik	RIKEN cDNA 4930419G24 gene	within coordinates
Pex5l	peroxisomal biogenesis factor 5-like	Intron
Rr575046	regulatory region 575046	714 bp distal
Rr575047	regulatory region 575047	822 bp distal