rs29887861 SNP Detail

Summary

• ID
  rs29887861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64083671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTTA ACCCAAGTTC CCTATAGGTA
  R
  CCTATCCAGT GTAGATGGCG TTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46351993	mCV24724791	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss136560653	ENSMUSSNP1824606	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29887861					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64083671 () rs orientation: forward

Symbol	Name	Function Class
Gm22455	predicted gene, 22455	734 bp upstream
Gm22571	predicted gene, 22571	447 bp downstream
Gm23136	predicted gene, 23136	272 bp upstream
Gm23344	predicted gene, 23344	1274 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Snord16a	small nucleolar RNA, C/D box 16A	867 bp downstream
Tssr85597	transcription start site region 85597	1417 bp downstream
Tssr85598	transcription start site region 85598	963 bp downstream
Tssr85599	transcription start site region 85599	776 bp downstream
Tssr85600	transcription start site region 85600	580 bp upstream
Tssr85601	transcription start site region 85601	985 bp upstream
Tssr85602	transcription start site region 85602	1052 bp upstream
Tssr85603	transcription start site region 85603	1323 bp upstream
Tssr85604	transcription start site region 85604	1363 bp upstream
Tssr85605	transcription start site region 85605	1886 bp upstream
Tssr90132	transcription start site region 90132	1399 bp downstream
Tssr90133	transcription start site region 90133	1954 bp downstream