rs29888112 SNP Detail

Summary

• ID
  rs29888112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66120604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGCAATCCA GTGGCTACAG GGAAATGGGG ATTTACACCC ACGGAAGCTT GCCTTACCAG
  GAACTTTCAG ACTCCTTTCA TTCACATTAC AATGTGGTAA AACTGCAACA TTCCTGTCTG
  TGTTAGGTAC GAAGAAACTG AGGGGGAGAC TTACACGATT GGCTAAACTC AGCAAAACTG
  GAAATAGACC CTGGGTCTTT GGACTCTAAA TTCTGAATTT GAGTGGTTGT AGTTTATAGA
  CTTACACATA TAAGATTAGA AACAGGTTAG TGGCTACAGT AGTGTGGGGA CACACACACA
  Y
  ACACACACAC ACACACACAC ACACACACAC ACACACACAA TTTTTTCAGT ACTGGCCATT
  GAACCCTGAA CATGGGGCAT GCTAGACAAG TACTCTACCA CTGACCCATA GCCTCAGCCA
  AGAGAGTTCA TGGGAGTAGC CTGGCTGGAG GGCGGTTATG GGAGATAAGG AAAGGGCCTC
  AGAGGCCCAG CGTTGGAACC TAGCCAGGTA GAGTGCAGAG AGGCCTCAGA AACGTCATCT
  CCAGAGTGTC TGTGCACCCC TTATAATTTG GCTGATCCAG TTCCTGGGGA CTGTAAGTTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss46352993	mCV23541350	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29888112					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66120604 () rs orientation: forward

Symbol	Name	Function Class
Dapk2	death-associated protein kinase 2	within coordinates
Rr401473	regulatory region 401473	892 bp downstream
Rr681677	regulatory region 681677	1601 bp distal
Rr681678	regulatory region 681678	935 bp distal
Rr681679	regulatory region 681679	within coordinates