rs29888121 SNP Detail

Summary

• ID
  rs29888121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAGCCCTG GAAGTGTCTC AGGGAGGAAA ATGATCCCCA
  AACCCACCTC TCAGGTTCTG GTTCTGCTTG CTCAGACGAA TCTGAGTTCA CTGAGTCTGC
  Y
  GGAGCTTTCC TAAAGCTCCA CTAGCCAGTA ACTAACTATG TTGCCAATAC TCCAATCTCC
  ACTTTCCAGG CACGCAGCCA GGTGGCAGTG AAGAGCTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46351702	mCV24902311	ABI	CRAMUS_MOUSE	f	SNP	T	T						C
ss50674825	NES14008196	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	C	T	C	C	T	C		C	C		C
ss136309802	ENSMUSSNP3880127	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss322906508	CHEV_9_37063550	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29888121					SNP	T	T	C	T	C	T	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674825	NES14008196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	378 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	562 bp distal
Rr676657	regulatory region 676657	457 bp distal
Rr676658	regulatory region 676658	238 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	71 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	552 bp upstream
Tssr88821	transcription start site region 88821	601 bp upstream
Tssr88822	transcription start site region 88822	573 bp upstream
Tssr88823	transcription start site region 88823	546 bp upstream
Tssr88824	transcription start site region 88824	523 bp upstream
Tssr88825	transcription start site region 88825	504 bp upstream
Tssr88826	transcription start site region 88826	412 bp upstream
Tssr88827	transcription start site region 88827	330 bp upstream
Tssr88828	transcription start site region 88828	300 bp upstream
Tssr88829	transcription start site region 88829	282 bp upstream
Tssr88830	transcription start site region 88830	254 bp upstream
Tssr88831	transcription start site region 88831	221 bp upstream