rs29888142 SNP Detail

Summary

• ID
  rs29888142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72346754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC CATCCAAAAA GTAAGTTGCA
  R
  TGTCCTTGTT AGTTTTCTTT CCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46353193	mCV23582348	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss136621053	ENSMUSSNP285908	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G		G
ss323002366	CHEV_9_72287279	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29888142					SNP	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72346754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	750 bp distal
Gm27231	predicted gene 27231	1607 bp downstream
Gm36948	predicted gene, 36948	1288 bp upstream
Mns1	meiosis-specific nuclear structural protein 1	within coordinates
Rr401506	regulatory region 401506	793 bp downstream
Rr682742	regulatory region 682742	927 bp distal
Rr682743	regulatory region 682743	435 bp distal
Rr682744	regulatory region 682744	729 bp proximal
Rr682745	regulatory region 682745	1359 bp proximal
Rr682746	regulatory region 682746	1434 bp proximal
Tssr85997	transcription start site region 85997	1456 bp downstream
Tssr85998	transcription start site region 85998	939 bp downstream
Tssr85999	transcription start site region 85999	894 bp downstream
Tssr86000	transcription start site region 86000	874 bp downstream
Tssr86001	transcription start site region 86001	856 bp downstream
Tssr86002	transcription start site region 86002	626 bp downstream