rs29888501 SNP Detail

Summary

• ID
  rs29888501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65200321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCTGAG TTCGAGGCCA
  GCCTGGTCTA CAGAGTGAGT TCTAGGACAG CCAGGGCTAC ACAGAGAAAC CCTGTCTCGA
  AAAAACAAAA ACAAAAAAAC CCATAACTTC TCTTTTTGGG CGGGAGAAGC CAGAGACAGC
  CCTCTTGGTT TGCTCACAGC ATCCATGGAG GGAGAGCTTC TGAGAGAGTC TAAGAACACA
  R
  TTGGAAAGCA ACATACTGAG AGGACTTGAG TCTCTCCTCA CAACTGTATT CCTGGATGCA
  GCTGAAGAAG GAGTGGGTCT TAGTGAAGAA AGACAAGAAT TCTCTTTCAT CTCTGAAACT
  TTACCATGAG GTGTTACCAC GAGTCAGCTC TCTAAGAAAG AACCCTGTAG TAGTATGAAC
  CACCTGGAAT TCCCCTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46351423	mCV23534740	ABI	CRAMUS_MOUSE	f	SNP	A	A					G
ss47725978	NES11329125	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	A		A	G	A		G	A	A	G		A
ss136566856	ENSMUSSNP721817	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss322986416	CHEV_9_65140846	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29888501					SNP	A	A	G	G	A	A	G	A	G	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47725978	NES11329125	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65200321 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	1221 bp upstream
Cpgi21943	CpG island 21943	956 bp proximal
Rr206623	regulatory region 206623	within coordinates
Rr368805	regulatory region 368805	940 bp upstream
Tssr85679	transcription start site region 85679	1118 bp upstream
Tssr85680	transcription start site region 85680	1140 bp upstream
Tssr85681	transcription start site region 85681	1236 bp upstream
Tssr85682	transcription start site region 85682	1331 bp upstream
Tssr85683	transcription start site region 85683	1356 bp upstream
Tssr85684	transcription start site region 85684	1388 bp upstream
Tssr85685	transcription start site region 85685	1401 bp upstream
Tssr85686	transcription start site region 85686	1518 bp upstream