rs29888675 SNP Detail

Summary

• ID
  rs29888675
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64737164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAGTTT TTGATCATCT
  ACTATGTCAT ATAAATTTAA AAAACTACAT CAATCATTAT TAAGTAGAAA GGTAAGAGGA
  CTCTCAAAGT TGTTTTCAAG GATTGAGTCT CAAAGTCTAC TTAATATATT ATGTCTGTGG
  AGTTTTAAGG TCAGGATCCC TTTTGGGGTT AAAGGATCTT TTCACAGGGG TCATCTAAGG
  W
  CGTTGGAAAA CACAGATATT TATGTTATGA CTCATAACAG TAGCAACATT ACGGTTATGA
  AGTAGCAACA AAAATAATTT TTTTGGCTGG GGGGTCATTA CAACATGAGG AACTGTATTA
  AAAGGGGGCA GAATTGGTGA AAATTGGAAT GTTCAACCTT GATCAAATGA CAGAATTCTA
  AATCTTCATT TAAGGTAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46352886	mCV25282390	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss136565488	ENSMUSSNP1169243	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss322985958	CHEV_9_64677689	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29888675					SNP	T	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64737164 () rs orientation: forward

Symbol	Name	Function Class
Dennd4a	DENN domain containing 4A	within coordinates
Tssr2912	transcription start site region 2912	238 bp downstream
Tssr2913	transcription start site region 2913	442 bp upstream