rs29889325 SNP Detail

Summary

• ID
  rs29889325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGCCCT TGTCTCAAAA
  GGCACTGATG AGAAGCGGTG ACAGGACTGG AAACAGAGCT CACCCTTTCC CTCAATGACC
  CACATCTTCC AGCTGGGTCC CACAGCCCAC AGGCTCCACA CCCCCAGCAA GGCCACTACT
  ACCTCTGCCC TGCTCCATTG TCTTTACAAA CTCCCACTCA GACTCATGGG AAGGTACAAA
  R
  TGAGAAGAGT GGCTTTCATG GTCTAAGAAG CCTGTGGGCA GGGTCACAGA CAACAGCCCA
  GCCCCACTGG GGAAAGAGCC CACGAGGCAT TCTTATCTCT GTGAAGCCTT TTGTAGGAGG
  CTGTAGCCTC CCCTTAGGCT GCCCGAGCTG CACCTGAAAG ATGGCACCTG CTGGATGCAG
  AGCTGGTGGT GTAAACAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47392425	NES11376734	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G	A		G	G	G	G
ss148811282	ENSMUSSNP7015106	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29889325					SNP	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392425	NES11376734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558607 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	within coordinates
Rr476039	regulatory region 476039	717 bp proximal
Rr476040	regulatory region 476040	1316 bp proximal
Tssr4016	transcription start site region 4016	1426 bp upstream
Tssr118891	transcription start site region 118891	1107 bp downstream
Tssr118892	transcription start site region 118892	1410 bp upstream
Tssr118893	transcription start site region 118893	1446 bp upstream
Tssr118894	transcription start site region 118894	1510 bp upstream
Tssr118895	transcription start site region 118895	1544 bp upstream
Tssr121784	transcription start site region 121784	1318 bp downstream
Tssr121785	transcription start site region 121785	1338 bp downstream
Tssr121786	transcription start site region 121786	1398 bp downstream