rs29889331 SNP Detail

Summary

• ID
  rs29889331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCAGCT GGGTCCCACA
  GCCCACAGGC TCCACACCCC CAGCAAGGCC ACTACTACCT CTGCCCTGCT CCATTGTCTT
  TACAAACTCC CACTCAGACT CATGGGAAGG TACAAAGTGA GAAGAGTGGC TTTCATGGTC
  TAAGAAGCCT GTGGGCAGGG TCACAGACAA CAGCCCAGCC CCACTGGGGA AAGAGCCCAC
  R
  AGGCATTCTT ATCTCTGTGA AGCCTTTTGT AGGAGGCTGT AGCCTCCCCT TAGGCTGCCC
  GAGCTGCACC TGAAAGATGG CACCTGCTGG ATGCAGAGCT GGTGGTGTAA ACAAGTCCAT
  ATTTGGTGAA GATGCGCCCC TGTCGCCCTG ATTGGCTGAA GCTGTGTGCC TGGTGAGGTG
  ACGTGGCCTG CTGTGAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47392431	NES11376740	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	A		A		A	G	A		A
ss148811294	ENSMUSSNP7053578	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G					A
ss324295898	CHEV_13_24466577	CHEVERUD	SCREENING_POP	f	SNP												G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29889331					SNP	G	G	G	G	G	G	G	A	G	G	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392431	NES11376740	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558691 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	within coordinates
Rr476039	regulatory region 476039	633 bp proximal
Rr476040	regulatory region 476040	1232 bp proximal
Tssr4016	transcription start site region 4016	1342 bp upstream
Tssr118891	transcription start site region 118891	1191 bp downstream
Tssr118892	transcription start site region 118892	1326 bp upstream
Tssr118893	transcription start site region 118893	1362 bp upstream
Tssr118894	transcription start site region 118894	1426 bp upstream
Tssr118895	transcription start site region 118895	1460 bp upstream
Tssr121784	transcription start site region 121784	1234 bp downstream
Tssr121785	transcription start site region 121785	1254 bp downstream
Tssr121786	transcription start site region 121786	1314 bp downstream