rs29889374 SNP Detail

Summary

• ID
  rs29889374
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34253111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATAACTT TTCTTGAGGG
  TTATCAGAGT GCTTCTGCTG AAATGGACAT ACTTTATGTT AGGTGAAGTG TCTCTGCAAA
  GAAGGTATTA GAAATGTGTA ATCAGACCAG AAAGCCCATG GGGCCTAACG GTTCAGCCCG
  TGGATGCTTA GCTGCCTGCT TAAAGTTTTG AGAACCTCTG ATGGCTCTTG GTGGTAAAGC
  M
  GTGAGAATTT CTGCTTCCCT CTGGTTTAGA CAGTGTTGTA TAAGATTGCT GTCCGTGTGC
  TGGGGACCTG GAGAGCTGGT TAATCCCTGA GTAGTGACTG GGTCACCAGG ATCATTGCAT
  TTCTGGCTTG CAAGCCCCCT ATTCTTTGAC ATAACAACTG ATATACTACA TATTTTATTC
  TTTGTAAAGC CAAAGCAACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577920	NES12876940	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29889374					SNP	C	C	C	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577920	NES12876940	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34253111 () rs orientation: forward

Symbol	Name	Function Class
Rr575109	regulatory region 575109	1423 bp distal
Rr575110	regulatory region 575110	384 bp distal