rs29889378 SNP Detail

Summary

• ID
  rs29889378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34252603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTTCCTT TTTGCCAACT TCCTGAAGCC ACATCTCCAA
  GCCTCGAGGT TTTGAGTCAT TGCTGCCTCC TAACGCCTGA CTTTGAAACA GCATGCCTGG
  Y
  CAGCTGCCGT GAAGGTGGCA CTGGGGTACT GGTTTGTGCT GGTATTGCAG TTTCAAAGGG
  CTTTACCTCT GATTATAACA GTTCCTGGAT AGTAGACTGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577924	NES12876936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29889378					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577924	NES12876936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34252603 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	1516 bp distal
Rr575109	regulatory region 575109	915 bp distal
Rr575110	regulatory region 575110	within coordinates
Tssr28802	transcription start site region 28802	1698 bp downstream
Tssr28803	transcription start site region 28803	1664 bp downstream
Tssr28804	transcription start site region 28804	1521 bp downstream