rs29889431 SNP Detail

Summary

• ID
  rs29889431
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119233170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTG CCTCTTTTAA GTTTAGGTTT
  K
  TTGAAAGCAT TGTCTCAGGA CCGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46352502	mCV24176375	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	T
ss137047121	ENSMUSSNP2238592	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29889431					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119233170 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	within coordinates
Cpgi22474	CpG island 22474	460 bp distal
Gm47320	predicted gene, 47320	1004 bp downstream
Rr688481	regulatory region 688481	1650 bp distal
Rr688483	regulatory region 688483	within coordinates
Rr688484	regulatory region 688484	1563 bp distal
Rr688485	regulatory region 688485	1403 bp distal
Tssr87682	transcription start site region 87682	1951 bp downstream
Tssr87683	transcription start site region 87683	1879 bp downstream
Tssr87684	transcription start site region 87684	1835 bp downstream
Tssr91983	transcription start site region 91983	618 bp upstream