rs29889970 SNP Detail

Summary

• ID
  rs29889970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44056926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAACCAG AGAAGATACA
  GGTAGCCTGT TTATAAGAAG CACACAAGAA CAAGCTATTT TCGACACTGA AAATATCCCT
  ATTCTAGCAA ATGTCCCAGT GTACCTAGGA AAGTAAAGCT AAGGATATCA CTGTAGGCTC
  CCCTTACAGG AAGACAAAGA GGATGGGGAT GCAGAAGACA GGTCAAGAGC CCACAGAATG
  R
  ACAGGTATTC AGCACTAAAA CCAGAAGAGA GCCAAGCCAA AGGGTACTAG CTACAGTGGA
  AGCCATGGTC TGCACTCTGA GTAACATCAA AGAGACCCGA GGTTGAATGG AGGCTAAGAA
  ATGCCACCCA AGGACAGAAG AGTGGCCTCA AGAGTGAGGA AAGCAATCTT GGGTGCCAAG
  ACTCCTAGGG AGAAGAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46352124	mCV24938856	ABI	CRAMUS_MOUSE	f	SNP	G	A					A	A
ss47686438	NES11345013	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A	G	A	A	G	A
ss136391643	ENSMUSSNP3970958	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29889970					SNP	?	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686438	NES11345013	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44056926 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Rr677565	regulatory region 677565	1323 bp distal
Rr677566	regulatory region 677566	988 bp distal
Rr677567	regulatory region 677567	1067 bp distal
Rr677568	regulatory region 677568	1739 bp proximal
Rr677569	regulatory region 677569	1854 bp proximal
Tssr89112	transcription start site region 89112	1081 bp upstream
Tssr89113	transcription start site region 89113	896 bp upstream