rs29890198 SNP Detail

Summary

• ID
  rs29890198
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20889474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC AGCCTCAAGG GCCCGTGTAC
  W
  CACATGCACA TACCCACAAT TACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46352630	mCV27566478	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss136225122	ENSMUSSNP2445137	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
ss322873764	CHEV_9_20782622	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29890198					SNP	T	T	A	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20889474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21408	CpG island 21408	1099 bp distal
Rr193935	regulatory region 193935	674 bp distal
Rr206018	regulatory region 206018	873 bp distal
Rr383049	regulatory region 383049	within coordinates
S1pr2	sphingosine-1-phosphate receptor 2	1385 bp upstream
Tssr88347	transcription start site region 88347	1459 bp upstream
Tssr88348	transcription start site region 88348	1430 bp upstream
Tssr88349	transcription start site region 88349	1404 bp upstream
Tssr88350	transcription start site region 88350	1128 bp downstream