rs29890204 SNP Detail

Summary

• ID
  rs29890204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCCATT GTCTTTACAA
  ACTCCCACTC AGACTCATGG GAAGGTACAA AGTGAGAAGA GTGGCTTTCA TGGTCTAAGA
  AGCCTGTGGG CAGGGTCACA GACAACAGCC CAGCCCCACT GGGGAAAGAG CCCACGAGGC
  ATTCTTATCT CTGTGAAGCC TTTTGTAGGA GGCTGTAGCC TCCCCTTAGG CTGCCCGAGC
  Y
  GCACCTGAAA GATGGCACCT GCTGGATGCA GAGCTGGTGG TGTAAACAAG TCCATATTTG
  GTGAAGATGC GCCCCTGTCG CCCTGATTGG CTGAAGCTGT GTGCCTGGTG AGGTGACGTG
  GCCTGCTGTG AGTGGATGGG GGCTGAGAGT ATATAAGAGT GAGAGGCTCC GGGTTCAGGG
  GAGAGAGATG AAGAGGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47392434	NES11376742	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	C		C		C	T	C		C
ss148811304	ENSMUSSNP3706047	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T					C
ss324295900	CHEV_13_24466642	CHEVERUD	SCREENING_POP	f	SNP											T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29890204					SNP	T	T	T	T	T	T	T	T	T	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392434	NES11376742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558756 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	within coordinates
Rr476039	regulatory region 476039	568 bp proximal
Rr476040	regulatory region 476040	1167 bp proximal
Tssr4016	transcription start site region 4016	1277 bp upstream
Tssr118891	transcription start site region 118891	1256 bp downstream
Tssr118892	transcription start site region 118892	1261 bp upstream
Tssr118893	transcription start site region 118893	1297 bp upstream
Tssr118894	transcription start site region 118894	1361 bp upstream
Tssr118895	transcription start site region 118895	1395 bp upstream
Tssr121784	transcription start site region 121784	1169 bp downstream
Tssr121785	transcription start site region 121785	1189 bp downstream
Tssr121786	transcription start site region 121786	1249 bp downstream