rs29890207 SNP Detail

Summary

• ID
  rs29890207
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGATGAA GAGGAAGAGA
  GATGAAGACT GAAGATTGCT GAATAAACTG CTGATAGAAG AACTCATTCT TGCTGGTCGA
  GGGCGGATGC GACAGCCTTT CTTTTTATGT CTTAACAGGA AGATATCTGG TCAAGTGGAT
  GAGCGTGGTA TAAAATTGAG ACCTGTAGAA CCATGAGGAA TGACATACTC ATCTAACCTG
  R
  ACTCTCACGC TTAGAGTTAT GAATCATACA TCTTTTTTCT TTTCAATCCT TAACACACTA
  GGGGAGGGGA GATAAGGAGG AGGAAAGAAA AGAAGTTATA TTCATACTTA ACAAAATATT
  CATCTCATTT AAATGAAAAA AATAGAGTCA CTGTAGGCTT GGGAGATAGT TCATTTGATA
  AAATGCTTGC CTTCCATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47392437	NES11376720	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29890207					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392437	NES11376720	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559139 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Tssr4016	transcription start site region 4016	894 bp upstream
Tssr118891	transcription start site region 118891	1639 bp downstream
Tssr118892	transcription start site region 118892	878 bp upstream
Tssr118893	transcription start site region 118893	914 bp upstream
Tssr118894	transcription start site region 118894	978 bp upstream
Tssr118895	transcription start site region 118895	1012 bp upstream
Tssr121784	transcription start site region 121784	786 bp downstream
Tssr121785	transcription start site region 121785	806 bp downstream
Tssr121786	transcription start site region 121786	866 bp downstream