rs29890210 SNP Detail

Summary

• ID
  rs29890210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTGAGA CCTGTAGAAC
  CATGAGGAAT GACATACTCA TCTAACCTGG ACTCTCACGC TTAGAGTTAT GAATCATACA
  TCTTTTTTCT TTTCAATCCT TAACACACTA GGGGAGGGGA GATAAGGAGG AGGAAAGAAA
  AGAAGTTATA TTCATACTTA ACAAAATATT CATCTCATTT AAATGAAAAA AATAGAGTCA
  Y
  TGTAGGCTTG GGAGATAGTT CATTTGATAA AATGCTTGCC TTCCATCTCC AGCTCCTGAA
  TTCAATGCCC AGACACCACG TAAGAGAAGC TGTCCTTGCT CAAAGTTCCA GCTCTGGTGA
  AGTAGAGACA AGCAGATCTC TAGGGTTTTC TGGGCAGCGA GCCTTGCATA TTTCACAAGT
  TCCAGGACAG TGAGAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47392440	NES11376721	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T		T	C		T
ss324295903	CHEV_13_24467176	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29890210					SNP	C	C	C	C	C	C	C	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392440	NES11376721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559290 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	246 bp distal
Rr476039	regulatory region 476039	34 bp proximal
Rr476040	regulatory region 476040	633 bp proximal
Tssr4016	transcription start site region 4016	743 bp upstream
Tssr118891	transcription start site region 118891	1790 bp downstream
Tssr118892	transcription start site region 118892	727 bp upstream
Tssr118893	transcription start site region 118893	763 bp upstream
Tssr118894	transcription start site region 118894	827 bp upstream
Tssr118895	transcription start site region 118895	861 bp upstream
Tssr121784	transcription start site region 121784	635 bp downstream
Tssr121785	transcription start site region 121785	655 bp downstream
Tssr121786	transcription start site region 121786	715 bp downstream