rs29890213 SNP Detail

Summary

• ID
  rs29890213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAACAAT GACATCTGAG
  GAATGGCACT CAGGGTTGTC CTGTGGTCAC TACATACTTT TAACCCTCCC AGGGCGAATG
  CACTAAGAAT CTATGATGGG GATGGGGGAG GTGGAGGTAC AGGCTATGAC ATGTTTCTTA
  CCATAACCCT AACCATTTGA ACTTAACAGT TATCTGCAAA AGTTTCATTT ACAAAGGAAT
  Y
  CATGCTGGCA CAGAAACAAA GTTCTAGGTA GCATACAAAC TTTCTAGGCT TCCTGAGGAA
  GCTCCATCCT CTCTGTGCTG TGAAGAGCCA GTATAAGCAT GTTCCCAGGC CCAACCCATG
  CTTTTCCTAC TGGAATGCCA GATTCTACCA GATCAGTTCA CAGATAGCTC AACAGAAGAG
  GAAATAAGAG AACTCACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47392443	NES11376684	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29890213					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392443	NES11376684	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559700 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	656 bp distal
Rr476039	regulatory region 476039	within coordinates
Rr476040	regulatory region 476040	223 bp proximal
Tssr4016	transcription start site region 4016	333 bp upstream
Tssr118892	transcription start site region 118892	317 bp upstream
Tssr118893	transcription start site region 118893	353 bp upstream
Tssr118894	transcription start site region 118894	417 bp upstream
Tssr118895	transcription start site region 118895	451 bp upstream
Tssr121784	transcription start site region 121784	225 bp downstream
Tssr121785	transcription start site region 121785	245 bp downstream
Tssr121786	transcription start site region 121786	305 bp downstream