TTACCTGAAA CCTTATACTT TGGATTAGAG CCCATGCCAC AGGTAATCTT AAAAAGGCAA ACGGAACATT GGCACTTGTA AGTAGCCACA GTGTTATTTT AAGTTTGAGA GGTAGCTCAG CCAGAATGGC ATAAATGAGC ACAGCCAGCT CTCCTGTCTC AGGGTGGCAT GAAAAGTGTT TATACTGAAG ACCACATTTC W AAGGTGAGGC GCAGAACCCC ACAGAGGCAG CCTTCCTGCT CCCAGAGCCA AGAGCAAAAC AACCCAGTGA GATCAGGGGC TTTAAGGACT GTTTAACTCT TTAGACTCTT GGCTGAAGGT TTGTTGTTGT TATTGTCTAA TAGAGAGATG CAATGCACAA TACAGGACTC AGGTGGTCTC ACACGAGTCT TGATGAGGGA W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49577930 | NES12876930 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | A | T | A | T | A |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs29890224 | SNP | A | A | A | A | A | A | A | A | A | A | T | A | T | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49577930 | NES12876930 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr3:34252218 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr575108 | regulatory region 575108 | 1131 bp distal | ||||||
Rr575109 | regulatory region 575109 | 530 bp distal | ||||||
Rr575110 | regulatory region 575110 | 228 bp proximal | ||||||
Tssr28802 | transcription start site region 28802 | 1313 bp downstream | ||||||
Tssr28803 | transcription start site region 28803 | 1279 bp downstream | ||||||
Tssr28804 | transcription start site region 28804 | 1136 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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