rs29890225 SNP Detail

Summary

• ID
  rs29890225
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34252198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGTCA GACAGATCAG
  TTACCTGAAA CCTTATACTT TGGATTAGAG CCCATGCCAC AGGTAATCTT AAAAAGGCAA
  ACGGAACATT GGCACTTGTA AGTAGCCACA GTGTTATTTT AAGTTTGAGA GGTAGCTCAG
  CCAGAATGGC ATAAATGAGC ACAGCCAGCT CTCCTGTCTC AGGGTGGCAT GAAAAGTGTT
  K
  ATACTGAAGA CCACATTTCA AAGGTGAGGC GCAGAACCCC ACAGAGGCAG CCTTCCTGCT
  CCCAGAGCCA AGAGCAAAAC AACCCAGTGA GATCAGGGGC TTTAAGGACT GTTTAACTCT
  TTAGACTCTT GGCTGAAGGT TTGTTGTTGT TATTGTCTAA TAGAGAGATG CAATGCACAA
  TACAGGACTC AGGTGGTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49577931	NES12876929	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs29890225					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577931	NES12876929	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34252198 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	1111 bp distal
Rr575109	regulatory region 575109	510 bp distal
Rr575110	regulatory region 575110	248 bp proximal
Tssr28802	transcription start site region 28802	1293 bp downstream
Tssr28803	transcription start site region 28803	1259 bp downstream
Tssr28804	transcription start site region 28804	1116 bp downstream