rs29890230 SNP Detail

Summary

• ID
  rs29890230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34251589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTGTTT TCTTCCATCC
  CTGTTCAGGA TTCGTTGCAA CAGAGCTGAG GTTTGCTTGT TGGAGGCGTT TGGGATAAGC
  ACGCACTCCT TGAAGGGAAG GGAGCTTCCT GCCACGTTTG CGTTGTTTGA TGTGAATTCT
  GGTTGACTTA GCTGGTTTTT ACTGGTGACA ATCAACGTTC TCAGTGCTGC TTCCTCTTGT
  R
  ATCTGTGATG CTGAGCTTTG TGTGGCATGG AACATACGCG TGCTAGTGTA GTAGTTTAAG
  ATACCCTGTG AGTATCACAG GCACTAGCTC TGGGGTTGCT TCTGTGAGCT AAGCACCCCT
  TGTACATTTC CCTTTTAAGT TCCAGTCATC ATGATTTCTC TCCATTTATG CATGAGGTAA
  AATTGTAGCA AAAATTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577936	NES12876924	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29890230					SNP	A	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577936	NES12876924	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34251589 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	502 bp distal
Rr575109	regulatory region 575109	within coordinates
Rr575110	regulatory region 575110	857 bp proximal
Tssr28802	transcription start site region 28802	684 bp downstream
Tssr28803	transcription start site region 28803	650 bp downstream
Tssr28804	transcription start site region 28804	507 bp downstream