rs29890333 SNP Detail

Summary

• ID
  rs29890333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99756695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTCAGTG GGAAAGGAAA AAATATATAT ATACGCATAT
  TCTAGATATA ATACCAGGAT CTGGGAGTTC CGAGTCCAAA GCCTATCCGC GGACAGTGAG
  R
  GGGACGTAAA TAAAGCAAAA CTGCCTACTT TTTTTTTTGT CCAAAGGGGG TACAGTCGAG
  ACTTGCTTTG GGAGAGTCGG GAGAGGGGAA GAAGATGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46351348	mCV25314640	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G	A
ss136852096	ENSMUSSNP7106263	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29890333					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99756695 () rs orientation: forward

Symbol	Name	Function Class
1700024K11Rik	RIKEN cDNA 1700024K11 gene	1951 bp upstream
Cpgi22205	CpG island 22205	217 bp proximal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	1076 bp upstream
Rr685461	regulatory region 685461	1461 bp distal
Rr685462	regulatory region 685462	500 bp distal
Rr685463	regulatory region 685463	586 bp proximal
Rr685464	regulatory region 685464	1087 bp proximal
Rr685465	regulatory region 685465	1518 bp proximal
Sox14	SRY (sex determining region Y)-box 14	within coordinates
Tssr91083	transcription start site region 91083	1505 bp downstream
Tssr91084	transcription start site region 91084	1556 bp downstream