rs29890437 SNP Detail

Summary

• ID
  rs29890437
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43946085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGAGGCA TTTTCTCAAT TAGTGATCAA GGGTGGGAGG
  GTCCATAGTG GGTGGTGCCA CCCCTGGTAG TATTGGGCTC TATAAGAAAG CAAGCTGAGC
  W
  AGCCTGGGGA AGCAAGCCAG TAAGTAACAT CCCTCCATGA CTTCTGCATC AGCTCCTGCT
  TTCTGACCTG CTTGAGTTCC CGTCCTAACT TCCTTTGGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46353908	mCV24938519	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29890437					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43946085 () rs orientation: forward

Symbol	Name	Function Class
Gm39323	predicted gene, 39323	within coordinates
Rr677506	regulatory region 677506	744 bp distal
Rr677507	regulatory region 677507	243 bp distal
Tssr89098	transcription start site region 89098	780 bp upstream
Tssr89099	transcription start site region 89099	718 bp upstream