rs29891116 SNP Detail

Summary

• ID
  rs29891116
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTTACC ATAACCCTAA
  CCATTTGAAC TTAACAGTTA TCTGCAAAAG TTTCATTTAC AAAGGAATCC ATGCTGGCAC
  AGAAACAAAG TTCTAGGTAG CATACAAACT TTCTAGGCTT CCTGAGGAAG CTCCATCCTC
  TCTGTGCTGT GAAGAGCCAG TATAAGCATG TTCCCAGGCC CAACCCATGC TTTTCCTACT
  K
  GAATGCCAGA TTCTACCAGA TCAGTTCACA GATAGCTCAA CAGAAGAGGA AATAAGAGAA
  CTCACTTAAA CGTCTGTTTC TTGAGGCCAC AACTGCAATG CAAACACAAG TCTTTGCTTA
  AGAGTTTTCA GCCCCCAAGC CCCTTCAACA GGGTGTGTTG GCACTTGCCG AGGAAGTGTA
  ATGTTGCTTC CTGTTTGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47392446	NES11376685	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29891116					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392446	NES11376685	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559832 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Tssr4016	transcription start site region 4016	201 bp upstream
Tssr118892	transcription start site region 118892	185 bp upstream
Tssr118893	transcription start site region 118893	221 bp upstream
Tssr118894	transcription start site region 118894	285 bp upstream
Tssr118895	transcription start site region 118895	319 bp upstream
Tssr121784	transcription start site region 121784	93 bp downstream
Tssr121785	transcription start site region 121785	113 bp downstream
Tssr121786	transcription start site region 121786	173 bp downstream