rs29891119 SNP Detail

Summary

• ID
  rs29891119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24560229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTAACC ACAGCCAGCC
  TGAGAGTTCC CAGAAACTGC TCTGCTGGTT TTGAATGGCA GGATGCTATC ACAACGGAGA
  AAGTGGTGAT GGGCAGGATT GTCTGAACGC TATTTAAAAG TGTGACCCAG TCTTTGCCTC
  AAAGCAAGAG GACTGAGGAG TTTCATTAAG AAAGAGAATG AAGAACTGGT ATGTTGGCTT
  R
  CTTGACAAAT GACATTATAT TATTCAGTTC AATGTTTACT TTTTTTTTCT AGCTACATAT
  CAAAATCTTA GAGTGGGATT CATAGTTGAT GCTTCCTGAT TACATTGGTG GCAATCTAGC
  CAAGTCCTTC TTTGAAATAT ATTGGGCACA TTGTTCATAC CTATGGGGTT GAGCTGTTGT
  GGGAGTCTTT CTGGAATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47392449	NES11376686	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29891119					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392449	NES11376686	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24560229 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	296 bp upstream
Rr476038	regulatory region 476038	1185 bp distal
Rr476039	regulatory region 476039	307 bp distal
Rr476040	regulatory region 476040	153 bp distal
Tssr4016	transcription start site region 4016	185 bp downstream
Tssr118892	transcription start site region 118892	201 bp downstream
Tssr118893	transcription start site region 118893	137 bp downstream
Tssr118894	transcription start site region 118894	101 bp downstream
Tssr118895	transcription start site region 118895	49 bp downstream
Tssr121784	transcription start site region 121784	287 bp upstream
Tssr121785	transcription start site region 121785	274 bp upstream
Tssr121786	transcription start site region 121786	213 bp upstream