rs29891122 SNP Detail

Summary

• ID
  rs29891122
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24561985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAGCGCT CTAATCAAAT
  CACTAGATGG TCCAACCAAC CAGCATCTAG TGATTGGACT TTTCTACCTT TTCTGTTCTG
  TTCTTTCCTC TTCACCTTTA CAACACCTTG AGAATCTACC TTGAAGCAAT GAGATGTTAC
  TCTTGGCATA CTACCCTCAT AGTTCCCATT TGTACCTCTA GCCTGACTGC TTTTAAATGA
  M
  TTTTGACATT TCCTGTACTA TTCCTGATTG ATTAGAATAA AAAGAGCATT GCTCATCTAA
  AACCATGCAC GTTCCTCCCT TGTCAGCTGT AGTCAAGTCT GATCCTTTGT GATTTTGGAG
  GACCATTGCT GTACAGGAAT CTCTCCAGTT CTAAGAGTGA CTGGGTTTTC CTCAACAATT
  GTTTGTTTGA TCCGAGTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47392452	NES11376618	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29891122					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392452	NES11376618	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24561985 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Rr476040	regulatory region 476040	1909 bp distal
Tssr4016	transcription start site region 4016	1941 bp downstream
Tssr118892	transcription start site region 118892	1957 bp downstream
Tssr118893	transcription start site region 118893	1893 bp downstream
Tssr118894	transcription start site region 118894	1857 bp downstream
Tssr118895	transcription start site region 118895	1805 bp downstream
Tssr121786	transcription start site region 121786	1969 bp upstream