rs29891175 SNP Detail

Summary

• ID
  rs29891175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34251240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCGGGTG TTGAAGTTAC
  CGTGGCTCTG TGGACTCAGT CGTCTCCAGT GGGGCCGAAG TTGGACGTCT CGCTGTCCAG
  GAGACTGAGC GGTCTGAGCA GGGAAAGTTT GGAGCTCCGC GTGATTGGAA AGAATGAAGG
  TGTGAGGATT CTGCCAACTT TTTCCTTTCT CTGCGTGTGC TGGGATCTTG TGGGGACTGC
  Y
  TCAAGAGAAC CCGCAGATGT GAGTTTCCCG ACGACTAACA CTTACTTCCC TCTTCTTTTT
  GCCTGCTAGA TTTCTTCTCA CCAACCCCTC TTCACCCGTC GGAGCCAGAA GGATGTGTGG
  ATAGACGGCT TAAGAACAGT AAGTAACGTG AGCTGTTTTC TTCCATCCCT GTTCAGGATT
  CGTTGCAACA GAGCTGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577941	NES12876919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C		T	C	T
ss134764193	ENSMUSSNP5250189	ENSEMBL	ENSEMBL_Sanger	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29891175					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577941	NES12876919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34251240 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	153 bp distal
Rr575109	regulatory region 575109	within coordinates
Rr575110	regulatory region 575110	1206 bp proximal
Tssr28802	transcription start site region 28802	335 bp downstream
Tssr28803	transcription start site region 28803	301 bp downstream
Tssr28804	transcription start site region 28804	158 bp downstream