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rs29891176 SNP Detail
Summary
  • ID
    rs29891176
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:34251212 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGAGAATGG GAGAGAAGCG
    GGAGCTGTGG ACCGGGTGTT GAAGTTACCG TGGCTCTGTG GACTCAGTCG TCTCCAGTGG
    GGCCGAAGTT GGACGTCTCG CTGTCCAGGA GACTGAGCGG TCTGAGCAGG GAAAGTTTGG
    AGCTCCGCGT GATTGGAAAG AATGAAGGTG TGAGGATTCT GCCAACTTTT TCCTTTCTCT
    R
    CGTGTGCTGG GATCTTGTGG GGACTGCTTC AAGAGAACCC GCAGATGTGA GTTTCCCGAC
    GACTAACACT TACTTCCCTC TTCTTTTTGC CTGCTAGATT TCTTCTCACC AACCCCTCTT
    CACCCGTCGG AGCCAGAAGG ATGTGTGGAT AGACGGCTTA AGAACAGTAA GTAACGTGAG
    CTGTTTTCTT CCATCCCTGT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MSM/Ms
NZW/LacJ
WSB/EiJ
ss49577942 NES12876918 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G A G G
ss134764187 ENSMUSSNP2098949 ENSEMBL ENSEMBL_Sanger f SNP G G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MSM/Ms
NZW/LacJ
WSB/EiJ
rs29891176 SNP G G G G G G G G G A A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49577942 NES12876918 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:34251212 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr575108 regulatory region 575108 125 bp distal
Rr575109 regulatory region 575109 within coordinates
Rr575110 regulatory region 575110 1234 bp proximal
Tssr28802 transcription start site region 28802 307 bp downstream
Tssr28803 transcription start site region 28803 273 bp downstream
Tssr28804 transcription start site region 28804 130 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory