rs29891178 SNP Detail

Summary

• ID
  rs29891178
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34251031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGAGGA AGGCTAAAGA
  AAAAAAGAAT CCGTAGCTTT TAAAGCTGGG CCTTAGTGGG ACTCTAAATG CAATGAAAGC
  AGTCTGTGTG GAGAGATTGA AATGCATTTC AAAGCCAGGC CTGACTAGGG GGGCACGGAG
  AACAGACCTA TGAGCGTTCC CTAGGAAGGG AAAAAAGTGA ATGGAGAATG GGAGAGAAGC
  S
  GGAGCTGTGG ACCGGGTGTT GAAGTTACCG TGGCTCTGTG GACTCAGTCG TCTCCAGTGG
  GGCCGAAGTT GGACGTCTCG CTGTCCAGGA GACTGAGCGG TCTGAGCAGG GAAAGTTTGG
  AGCTCCGCGT GATTGGAAAG AATGAAGGTG TGAGGATTCT GCCAACTTTT TCCTTTCTCT
  GCGTGTGCTG GGATCTTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577944	NES12876916	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	C	G	G	G	C		G	G	G
ss134764178	ENSMUSSNP1599770	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29891178					SNP	G	G	G	G	G	G	C	G	G	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577944	NES12876916	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34251031 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	within coordinates
Rr575109	regulatory region 575109	57 bp proximal
Rr575110	regulatory region 575110	1415 bp proximal
Tssr28802	transcription start site region 28802	126 bp downstream
Tssr28803	transcription start site region 28803	92 bp downstream
Tssr28804	transcription start site region 28804	40 bp upstream