rs29891997 SNP Detail

Summary

• ID
  rs29891997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87611415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA AAGAAAGCAG TAAAGATTTA
  R
  AAAGGAAGCT ACTGTCTGGG GCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46351551	mCV24942049	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss136773411	ENSMUSSNP6922056	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss323061726	CHEV_9_87624197	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29891997					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87611415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	9 bp proximal
D030062O11Rik	RIKEN cDNA D030062O11 gene	within coordinates
Rr684220	regulatory region 684220	1888 bp proximal
Tbx18	T-box18	within coordinates
Tssr2959	transcription start site region 2959	1875 bp downstream
Tssr90806	transcription start site region 90806	1774 bp downstream
Tssr90807	transcription start site region 90807	1801 bp downstream
Tssr90808	transcription start site region 90808	1886 bp downstream
Tssr90809	transcription start site region 90809	1912 bp downstream