rs29892242 SNP Detail

Summary

• ID
  rs29892242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44387975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA CATTTGAAGA AACAGGCCTG
  R
  AAAGTGATTA GGCCGGGACC TTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46352045	mCV25082935	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss47688646	NES11326862	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G		G	G	A	G		G	G	A	G		A
ss136396111	ENSMUSSNP6079935	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss322940976	CHEV_9_44284761	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29892242					SNP	G	G	G	A	G	G	G	A	G	G	A	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688646	NES11326862	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44387975 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1762 bp proximal
Gm10023	predicted gene 10023	1246 bp downstream
Gm22540	predicted gene, 22540	163 bp upstream
Gm47204	predicted gene, 47204	34 bp downstream
Rr195028	regulatory region 195028	375 bp distal
Rr203857	regulatory region 203857	409 bp distal
Rr206312	regulatory region 206312	825 bp proximal
Rr209142	regulatory region 209142	1775 bp distal
Rr209143	regulatory region 209143	within coordinates