rs29892386 SNP Detail

Summary

• ID
  rs29892386
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33195568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTCTAGAC CATCTAAGTT TCCACAGCAT TCTTTCTTAA
  AATATTCTGA AAATTCAGTT AAAATTATTT TGGAGGGTGT GTCAATTCAC CAGATTGTTT
  W
  TTCAGTTTTG CATTCCCAAG AACATATTTT GGGGAAAAAA AAAACCACAA AAATCCCCAA
  AACAAAACAT CATGGAAAGT TTTTAATAAT TTGTATTAGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46893386	NES10798341	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29892386					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46893386	NES10798341	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33195568 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13064	CpG island 13064			914 bp proximal
Pex5l	peroxisomal biogenesis factor 5-like			Intron
				Noncoding-Transcript-Variant
Rr575054	regulatory region 575054			637 bp proximal
Rr575055	regulatory region 575055			1653 bp proximal
Tssr32953	transcription start site region 32953			1566 bp downstream
Tssr32954	transcription start site region 32954			1589 bp downstream
Tssr32955	transcription start site region 32955			1606 bp downstream
Tssr32956	transcription start site region 32956			1705 bp downstream
Tssr32957	transcription start site region 32957			1752 bp downstream
Tssr32958	transcription start site region 32958			1780 bp downstream
Tssr32959	transcription start site region 32959			1808 bp downstream
Tssr32960	transcription start site region 32960			1856 bp downstream
Tssr32961	transcription start site region 32961			1875 bp downstream