rs29892389 SNP Detail

Summary

• ID
  rs29892389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33196041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTTTAT TTTTTTCAGT
  AGTGGGAGAG TGCCTTTGAT TTTAAACTTT CAAGACAGGC AGACTGTATT TGCTACATAT
  TTTAAAAATT ATACTAGTCA TTATCTGTCA AATGTGACAT AATCCTATTA ATGACTTTCA
  AAACAGGATG ATGTCAGTGA CGGGGCTATG CTGTTGGAAT TCTACTCGGG TGATTCTGAA
  Y
  TCTTAACAAA CTTAAGATAC AATCAGTAAT ATGCTTTAGA TAAGGTACAA TTAGTGCTGT
  ACATGATCGT TTAAAGGAAT TTCCCCAAGA CCTGGAAATT AAATATTAAG TCATGCACGC
  AGCAGAGTAT TTGTTATGTC TTAAGGAGTC TAAAAGATAC TGGAGCGGCA TCTTAGGCAC
  TCACAGAAAC ACAACTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46893389	NES10798343	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29892389					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46893389	NES10798343	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33196041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13064	CpG island 13064			441 bp proximal
Pex5l	peroxisomal biogenesis factor 5-like			Intron
				Noncoding-Transcript-Variant
Rr575054	regulatory region 575054			164 bp proximal
Rr575055	regulatory region 575055			1180 bp proximal
Tssr32953	transcription start site region 32953			1093 bp downstream
Tssr32954	transcription start site region 32954			1116 bp downstream
Tssr32955	transcription start site region 32955			1133 bp downstream
Tssr32956	transcription start site region 32956			1232 bp downstream
Tssr32957	transcription start site region 32957			1279 bp downstream
Tssr32958	transcription start site region 32958			1307 bp downstream
Tssr32959	transcription start site region 32959			1335 bp downstream
Tssr32960	transcription start site region 32960			1383 bp downstream
Tssr32961	transcription start site region 32961			1402 bp downstream