rs29892392 SNP Detail

Summary

• ID
  rs29892392
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33196368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTGTTA TGTCTTAAGG
  AGTCTAAAAG ATACTGGAGC GGCATCTTAG GCACTCACAG AAACACAACT GATGGATGCC
  AGGTGTAGGG GACACAGCCT ATGAGGACTG CTAGCTGAGA GTCTTTGGAA AGGAAGCCCC
  AGGGAAAAAC ATATCAAGGG GTTGGGAAGG AGCTCCGCGC ACACTTTAGA ACGCTGAGTT
  M
  GTGTTTGGGT TATCTTTCCA CCACTCCGCT GCATAATTTT ATCATGAGGA AGATTCAACC
  TCGTGCATGA AAACTAAAAT CAAGGTTAAA GTAATCTTCC AGCTGAGTAC TGCGCTGGCA
  TCTGAAAAAA ACCCCTCCTG AGAACACGCT CCGCTGTGAC TACTGGGACA GGTGACGATG
  TCCCGTCACC TGAAGGGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46893392	NES10798346	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29892392					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46893392	NES10798346	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33196368 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13064	CpG island 13064			114 bp proximal
Pex5l	peroxisomal biogenesis factor 5-like			Intron
				Noncoding-Transcript-Variant
Rr575054	regulatory region 575054			within coordinates
Rr575055	regulatory region 575055			853 bp proximal
Tssr32953	transcription start site region 32953			766 bp downstream
Tssr32954	transcription start site region 32954			789 bp downstream
Tssr32955	transcription start site region 32955			806 bp downstream
Tssr32956	transcription start site region 32956			905 bp downstream
Tssr32957	transcription start site region 32957			952 bp downstream
Tssr32958	transcription start site region 32958			980 bp downstream
Tssr32959	transcription start site region 32959			1008 bp downstream
Tssr32960	transcription start site region 32960			1056 bp downstream
Tssr32961	transcription start site region 32961			1075 bp downstream