rs29892413 SNP Detail

Summary

• ID
  rs29892413
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53625934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT GAAGGCCAGC AAAACCACAT
  K
  TCAATACTCA TTTAAAGTGG ATCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss39129674	mCV22986294	ABI	CRAMUS_MOUSE	f	SNP	G	G		T	G
ss61805338	NES17735904	PERLEGEN	MM_PANEL2	f	SNP			G		G	G		T	G	T
ss149017706	ENSMUSSNP6452252	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			G
ss324342428	CHEV_13_53567267	CHEVERUD	SCREENING_POP	f	SNP							G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29892413					SNP	G	G	G	T	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805338	NES17735904	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53625934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	223 bp proximal
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	within coordinates
Rr281405	regulatory region 281405	within coordinates
Tssr122586	transcription start site region 122586	814 bp downstream
Tssr122587	transcription start site region 122587	837 bp downstream
Tssr122588	transcription start site region 122588	902 bp downstream
Tssr122589	transcription start site region 122589	924 bp downstream