rs29892539 SNP Detail

Summary

• ID
  rs29892539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108687224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAC CTGGTGTTTG CCCTTCTTTT
  Y
  CAAAACTTTC CCTTTCTGTC GCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46352930	mCV25034470	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss136953288	ENSMUSSNP2445027	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss323192896	CHEV_9_108712356	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29892539					SNP	T	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108687224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22353	CpG island 22353	959 bp distal
Nckipsd	NCK interacting protein with SH3 domain	within coordinates
Rr205762	regulatory region 205762	423 bp distal
Tssr87162	transcription start site region 87162	1674 bp downstream
Tssr87163	transcription start site region 87163	1584 bp downstream