rs29892746 SNP Detail

Summary

• ID
  rs29892746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64737038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGACTC CCTATTTAAG
  CCAAAGATGG CCTTCACCTT TCTCCACTCC TCAGTACACT GGGGATCACA TACCTGTATA
  AGATGCCTGT CTTAATGATT AGGTTTCTGT TTGAAGTTTC TGTTTGTTTT TAGTTTTTGA
  TCATCTACTA TGTCATATAA ATTTAAAAAA CTACATCAAT CATTATTAAG TAGAAAGGTA
  R
  GAGGACTCTC AAAGTTGTTT TCAAGGATTG AGTCTCAAAG TCTACTTAAT ATATTATGTC
  TGTGGAGTTT TAAGGTCAGG ATCCCTTTTG GGGTTAAAGG ATCTTTTCAC AGGGGTCATC
  TAAGGTCGTT GGAAAACACA GATATTTATG TTATGACTCA TAACAGTAGC AACATTACGG
  TTATGAAGTA GCAACAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46353529	mCV25282389	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		A
ss47722728	NES11313298	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G		G	A	A		G	A	A		A
ss136565485	ENSMUSSNP476563	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss322985957	CHEV_9_64677563	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29892746					SNP	A	A	G	A	A	A	G	A	G	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47722728	NES11313298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64737038 () rs orientation: forward

Symbol	Name	Function Class
Dennd4a	DENN domain containing 4A	within coordinates
Rr210200	regulatory region 210200	within coordinates
Tssr2912	transcription start site region 2912	364 bp downstream
Tssr2913	transcription start site region 2913	568 bp upstream