rs29892963 SNP Detail

Summary

• ID
  rs29892963
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGAGGC TGCTTACTCA
  CATAGGACAG GTCAAGGAAA CAAAGACAGA CCTGGAAGCA GGGCCAGCTA ATAAACCTTG
  AGGTCCATCC CCCAGAGATC CACTTCCTTG AAACAGCACC ACCAATCTGG GGATAAAGTT
  TTCAAACACT TGGGCCGTAG GGGGACATGC AAATCTGGTT CTGACTGTGC CTAGCCAGGG
  M
  TGTACAGTAA TGAGGTTGCT CAGACTCTGT GTGCTCTGCT AGGACCCTGT GTTTTACATG
  ACGTTACTGG CATGTGTGAC CTCTAACATG ACAATACCTG AAAAGGTTTT ACTTTGTATT
  AGTAGAAATC AAAGGATTAC TGAAATAAGT GTGTGTGCGC GTGTGTGTCA ATAAATTCAT
  CATTATTAAG CAGTTTACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47392413	NES11376797	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29892963					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392413	NES11376797	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558042 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	540 bp proximal
Rr476039	regulatory region 476039	1282 bp proximal
Rr476040	regulatory region 476040	1881 bp proximal
Tssr4016	transcription start site region 4016	1991 bp upstream
Tssr118891	transcription start site region 118891	542 bp downstream
Tssr118892	transcription start site region 118892	1975 bp upstream
Tssr121784	transcription start site region 121784	1883 bp downstream
Tssr121785	transcription start site region 121785	1903 bp downstream
Tssr121786	transcription start site region 121786	1963 bp downstream