rs29893906 SNP Detail

Summary

• ID
  rs29893906
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACATAGG ACAGGTCAAG
  GAAACAAAGA CAGACCTGGA AGCAGGGCCA GCTAATAAAC CTTGAGGTCC ATCCCCCAGA
  GATCCACTTC CTTGAAACAG CACCACCAAT CTGGGGATAA AGTTTTCAAA CACTTGGGCC
  GTAGGGGGAC ATGCAAATCT GGTTCTGACT GTGCCTAGCC AGGGCTGTAC AGTAATGAGG
  W
  TGCTCAGACT CTGTGTGCTC TGCTAGGACC CTGTGTTTTA CATGACGTTA CTGGCATGTG
  TGACCTCTAA CATGACAATA CCTGAAAAGG TTTTACTTTG TATTAGTAGA AATCAAAGGA
  TTACTGAAAT AAGTGTGTGT GCGCGTGTGT GTCAATAAAT TCATCATTAT TAAGCAGTTT
  ACATTCTTGT GTGTCTAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47392416	NES11376798	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29893906					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392416	NES11376798	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558058 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	524 bp proximal
Rr476039	regulatory region 476039	1266 bp proximal
Rr476040	regulatory region 476040	1865 bp proximal
Tssr4016	transcription start site region 4016	1975 bp upstream
Tssr118891	transcription start site region 118891	558 bp downstream
Tssr118892	transcription start site region 118892	1959 bp upstream
Tssr118893	transcription start site region 118893	1995 bp upstream
Tssr121784	transcription start site region 121784	1867 bp downstream
Tssr121785	transcription start site region 121785	1887 bp downstream
Tssr121786	transcription start site region 121786	1947 bp downstream