rs29893909 SNP Detail

Summary

• ID
  rs29893909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCTAAT AAACCTTGAG
  GTCCATCCCC CAGAGATCCA CTTCCTTGAA ACAGCACCAC CAATCTGGGG ATAAAGTTTT
  CAAACACTTG GGCCGTAGGG GGACATGCAA ATCTGGTTCT GACTGTGCCT AGCCAGGGCT
  GTACAGTAAT GAGGTTGCTC AGACTCTGTG TGCTCTGCTA GGACCCTGTG TTTTACATGA
  Y
  GTTACTGGCA TGTGTGACCT CTAACATGAC AATACCTGAA AAGGTTTTAC TTTGTATTAG
  TAGAAATCAA AGGATTACTG AAATAAGTGT GTGTGCGCGT GTGTGTCAAT AAATTCATCA
  TTATTAAGCA GTTTACATTC TTGTGTGTCT AGTGATAGGG GTCCTTTCCA GACACCTATG
  TGTGGATAAT TTGTGGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47392419	NES11376800	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T		C	T	C	T		T
ss148811247	ENSMUSSNP91511	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss324295887	CHEV_13_24465990	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29893909					SNP	C	C	C	C	C	T	C	C	T	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392419	NES11376800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558104 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Tssr4016	transcription start site region 4016	1929 bp upstream
Tssr118891	transcription start site region 118891	604 bp downstream
Tssr118892	transcription start site region 118892	1913 bp upstream
Tssr118893	transcription start site region 118893	1949 bp upstream
Tssr121784	transcription start site region 121784	1821 bp downstream
Tssr121785	transcription start site region 121785	1841 bp downstream
Tssr121786	transcription start site region 121786	1901 bp downstream