rs29893912 SNP Detail

Summary

• ID
  rs29893912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCTAGT GATAGGGGTC
  CTTTCCAGAC ACCTATGTGT GGATAATTTG TGGGACCCAG GCTTCCTTTT AACCTGGTGC
  CTTGCCTCTG AGAAGAATTC CAAAGAGAAC GGGCTAGGTG GATGACCTGC AGTGGCAGAC
  CATTGGCAGA GGAAGTGGAT CTCTGCCCTT GTCTCAAAAG GCACTGATGA GAAGCGGTGA
  Y
  AGGACTGGAA ACAGAGCTCA CCCTTTCCCT CAATGACCCA CATCTTCCAG CTGGGTCCCA
  CAGCCCACAG GCTCCACACC CCCAGCAAGG CCACTACTAC CTCTGCCCTG CTCCATTGTC
  TTTACAAACT CCCACTCAGA CTCATGGGAA GGTACAAAGT GAGAAGAGTG GCTTTCATGG
  TCTAAGAAGC CTGTGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47392422	NES11376731	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	T			T	C		T
ss148811272	ENSMUSSNP4849863	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				T
ss324295895	CHEV_13_24466334	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29893912					SNP	C	C	C	C	C	C	C	T	C	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47392422	NES11376731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558448 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Tssr4016	transcription start site region 4016	1585 bp upstream
Tssr118891	transcription start site region 118891	948 bp downstream
Tssr118892	transcription start site region 118892	1569 bp upstream
Tssr118893	transcription start site region 118893	1605 bp upstream
Tssr118894	transcription start site region 118894	1669 bp upstream
Tssr118895	transcription start site region 118895	1703 bp upstream
Tssr121784	transcription start site region 121784	1477 bp downstream
Tssr121785	transcription start site region 121785	1497 bp downstream
Tssr121786	transcription start site region 121786	1557 bp downstream