rs29894388 SNP Detail

Summary

• ID
  rs29894388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59788692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCACCATGCC TGGCTGCAGG ACCATTTTAA CTAAAACAAA AATAAAAGGA CTGAGCGTGG
  AATACACACC CATCATCCTG TCACTTAGGT AGATCAGTTC ACGAGGCAGG AAGATCAGTT
  CAAAGGCCAA CTTTGGCTAC ATGGTCAGTT TGAGGCCAGC CTGGGAGACT GCCTTAGGCA
  AAACCGAAGA AAAAAATAGT AACATTAACT GCAAGAAATG CCTGCAGGAT ACCTGGGATC
  TCAAGATTTA GGGGATGAAG GCAGCAAAGT CAATTCAAGG CCTTAGCTGC ACAGTGAGTT
  Y
  CGAGGTCAAC CAGGCTACAC GAGAGCTTAT CTCAAAAAGC AAAACAAAAA AGTGTCAGCC
  CTGGATTCCT GACATCGCCA GAAAGAGTGG CTTCAGAACA GCTTGGAACT TGTGTTTTGA
  TCTCCACTAC AGATCAGGGG CTTTGGGGCT GCAGGTCATC TTCAGATTAA ACAACAGGGA
  AGTGCCCGGT GTGGTGGTGA ATGCCTTTAA TCCTAGCACT CAGCAGAGAC AGGTAGATTT
  CAGTGAGTTT GAAGCCAGCT TGGTTTACAT ACAGAGTTTC AGGATAGCTA GAGCTACATT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39129534	mCV23287405	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29894388					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59788692 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Rr481236	regulatory region 481236	1137 bp distal
Rr481237	regulatory region 481237	1669 bp proximal
Tssr4093	transcription start site region 4093	641 bp upstream
Tssr122874	transcription start site region 122874	706 bp upstream
Tssr122875	transcription start site region 122875	689 bp upstream