rs29895147 SNP Detail

Summary

• ID
  rs29895147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11505246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACTACT TCCTTGTCTA
  ATCTGGTCAT CACAAATCCT TGTGTTTTTT AGAAAGAACC AGGTTGGAGA TCAAATTGTC
  CTGTTTTCTT TGTATCTTTT CAGCCCCTGT TGGGGTGGCT AGAGCACATT GTGCTTGGTT
  GGATGCTGTG GGATTGTATC ATTGCAGTGT GCATGTAGAG AGTTTCAAGC AGCTTATGGA
  Y
  AAAATGTCAA ACTTGTCCAG ACATGTCTTG TAGCAGAAAG ATTGCACATC AATGAATAGA
  CTGTTTATTT ACTCAGTACC AGCAACGTTC TGCAGCATCA TACTATTCCC CAGTACCCAT
  GTGGACAGAG TAGGCTCTCA GAACACTGGA TGAGAGCTTC ACACAACCAT TGCAACAACC
  AGGATCATGA CAATGGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39129323	mCV25000049	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss52615883	NES15504975	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		T	C	C	T		T	T	C	T		T
ss148674849	ENSMUSSNP5495064	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss324264611	CHEV_13_11582627	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29895147					SNP	T	T	C	T	C	T	C	C	T	C	C	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52615883	NES15504975	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11505246 () rs orientation: forward

Symbol	Name	Function Class
Rr387978	regulatory region 387978	within coordinates