rs29895427 SNP Detail

Summary

• ID
  rs29895427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45865512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATCCTG ATGGTTGATC
  ATGGCCTGCC AGAAACCAAA CTCCTCTCCC TCCCAAAGAA AGCCTCAGGT GCCTCCTCCT
  CAACTCCAGT GCTTCCGAGT CAATCCAGAT CGGGCCTTGG AGAATGAGCA AGAGAGCTAG
  GCAGGCCACA CAGCCAGGCA GCAAGAATCT CCCAGGCTGT GCTCTGCCTG GGCCCAGCTC
  Y
  GCCAGCCTTC TTTCTACTTT CACTACTGGG AAGAAATGAG TAAGAAGTCG GAGATAGTTC
  TGTCTTAGAA ACAAACTCCC TTTTCTCTTG CCACTCAGCC TTCGAGGGCC TTATCTTGTC
  ACCTTCAACT TACAAGGCCA GCTGGCTTTC TGAGGCAAGG AGGTCTGTCT CCTTCACCTC
  CCTGTGACCG AGCTCTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46353071	mCV25173041	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss136420933	ENSMUSSNP5026281	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29895427					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45865512 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A830035O19Rik	RIKEN cDNA A830035O19 gene			within coordinates
Cpgi21698	CpG island 21698			219 bp proximal
Rr678012	regulatory region 678012			103 bp distal
Rr678013	regulatory region 678013			753 bp proximal
Sidt2	SID1 transmembrane family, member 2			Intron
				Noncoding-Transcript-Variant
Tssr84819	transcription start site region 84819			1113 bp upstream
Tssr89292	transcription start site region 89292			1330 bp upstream
Tssr89293	transcription start site region 89293			530 bp upstream
Tssr89294	transcription start site region 89294			752 bp downstream
Tssr89295	transcription start site region 89295			956 bp downstream
Tssr89296	transcription start site region 89296			982 bp downstream
Tssr89297	transcription start site region 89297			1012 bp downstream
Tssr89298	transcription start site region 89298			1039 bp downstream
Tssr89299	transcription start site region 89299			1065 bp downstream