rs29896525 SNP Detail

Summary

• ID
  rs29896525
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:70570107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCGGGA AATCAATAGA
  GGTATTAAAG GACGCTTCCC TGCGGGGCTA ACCGGAAATG GGAGCAAAGA AAGGAAGCTT
  CCCTGCGGGC TAACCGGAAA TGGGAACAAA GAAACGAGCC TCGGTGCCTA CAACCTTTCC
  AGTAATTGAT GCCTCTAAGA AAGATCCAGC AGGCCTTCAT GAAGTTAGTT ATTTCCATCA
  W
  CCTGCTAGTA GCCATCTGGG CAGTGTCTGC TCAATCCAAA GCGGCCCTTT TCTGAGAATT
  GCTGAAATGA GTCCCGGAAG CCATGTTGGT TCTGTGTTGT TTCCCTGTCT CACCCACAGT
  CGTGATTGAT GGGAACCCAA GGGCTACCCA CCCTAACCAG GGTCAATCAG ATTCACTGAG
  CTGAGACTTG CCTTGTGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47891435	NES11926506	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29896525					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47891435	NES11926506	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:70570107 () rs orientation: forward

Symbol	Name	Function Class
Gm33979	predicted gene, 33979	within coordinates
Rr220222	regulatory region 220222	507 bp distal
Rr384898	regulatory region 384898	within coordinates