rs29896605 SNP Detail

Summary

• ID
  rs29896605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114119121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TACTCCTTTT AGGTTAAAGA CAATAGATTA GTTAAGAGAT ACTCATCTCA TTTCTACAAT
  TATGGCCCTG ACAGTGACCT TACATCTAAG CCTAGTCTCT CTTCATATCC AGAGGGGCCT
  TGGAATTTCT TTATACTATG AAAGAGAAAT CCTTACAGTT GCTGATAATG CTATTATTAA
  CTCAGTGTGA ATCATATGTG AATTACTAGA CAATAAAATC CCTCTCCCAC TGGGATTAAA
  GAGTATCTGG CAGTATAGGC TTTTGTTTGA ATTCAATATG TAATATATAT ATATATATAT
  R
  TATATATATA TATATATACA TATATATATA CACACACACA CATTTATGTG TAAGAGATGT
  AAGACATTGT GTGTGTGAAA TATAGATGCT AAGAGAAATA GTATGTCACT GACCGGTATG
  GTCATTATAT CAAGCTCTGT GGTTAATGCT TGTGTGAGGG CTGTAATGTA TAGAAGAGAA
  AATATTTCCT TTGTGCCATG AGGGTGCCCT TCCAGCCTTG ATTTGGAGGT TTTGGCTATC
  TTAGAGAGAA TGCTGTTGAG TGGATAAACA TATGCCAGGT AGGTCCCAAT CCACAGAAAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39129934	mCV24442769	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29896605					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114119121 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr486631	regulatory region 486631	461 bp distal
Tssr121196	transcription start site region 121196	1090 bp downstream