rs29896999 SNP Detail

Summary

• ID
  rs29896999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34308848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGA GGAGCAGTTC CACATAGGCA
  Y
  CAAGAGCTAA GAGATGGATT ATTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45417676	mCV24760496	ABI	CRAMUS_MOUSE	f	SNP	T	C					T
ss49577615	NES12873325	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	C	T		T		T
ss134764739	ENSMUSSNP6891	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
ss320701294	CHEV_3_34153621	CHEVERUD	SCREENING_POP	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs29896999					SNP	T	C	C	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577615	NES12873325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34308848 () rs orientation: forward

Symbol	Name	Function Class
Gm52623	predicted gene, 52623	within coordinates
Rr80429	regulatory region 80429	1049 bp distal